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droplet-based single nucleus transcriptomic analysis  (10X Genomics)

 
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    10X Genomics droplet-based single nucleus transcriptomic analysis
    Droplet Based Single Nucleus Transcriptomic Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/based+transcriptome+analysis/droplet+based+single+nucleus+transcriptomic+analysis/pm39541349-66-34-30
    Average 90 stars, based on 1 article reviews
    droplet-based single nucleus transcriptomic analysis - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: Bridging cell morphological behaviors and molecular dynamics in multi-modal spatial omics with MorphLink
    Article Snippet: Publicly available data were acquired from the following websites or accession numbers: (1) human bladder tumor 10x Visium data (GEO repository: GSE246011 ); (2) zebrafish melanoma 10x Visium data (GEO repository: GSE159709 ); (3) human tonsil spatial CITE-seq data ( https://www.10xgenomics.com/datasets/gene-protein-expression-library-of-human-tonsil-cytassist-ffpe-2-standard ); (4) human HER2-positive breast tumor spatial transcriptomics data ( https://github.com/almaan/her2st ); (5) human breast tumor 10x Visium data ( https://www.10xgenomics.com/datasets/human-breast-cancer-visium-fresh-frozen-whole-transcriptome-1-standard ); (6) mouse brain 10x Visium data ( https://www.10xgenomics.com/datasets/fresh-frozen-visium-on-cytassist-mouse-brain-probe-based-whole-transcriptome-profiling-2-standard ); (7) mouse embryo 10x Visium data ( https://www.10xgenomics.com/datasets/visium-cytassist-mouse-embryo-11-mm-capture-area-ffpe-2-standard ); (8) human breast tumor H&E images from TCGA data ( https://portal.gdc.cancer.gov/ sample ID: DX1.01FB49CC, DX1.392580F3, DX1.0E26C46D).

    Article Title: Single-cell technologies: From research to application
    Article Snippet: Based on single-cell transcriptome analysis technology, Pijuan-Sala et al. used 10X Genomics to sequence and analyze mouse embryos from 6.5 to 8.5 days after fertilization, and obtained a large number of embryonic single-cell transcriptomes.

    Single Cell:

    Article Title: Single-cell transcriptomics of neuroinflammation and cerebrovascular endothelial cells in the aged rat hippocampus
    Article Snippet: .. Based on these results, we conducted single-cell transcriptome analysis (scRNA-seq) on aging rat hippocampus on day 3 after LPS or vehicle injection using the 10X Genomics platform to examine changes in the neuroinflammatory microenvironment ( H). ..

    Analysis:

    Article Title: Single-cell transcriptomics of neuroinflammation and cerebrovascular endothelial cells in the aged rat hippocampus
    Article Snippet: .. Based on these results, we conducted single-cell transcriptome analysis (scRNA-seq) on aging rat hippocampus on day 3 after LPS or vehicle injection using the 10X Genomics platform to examine changes in the neuroinflammatory microenvironment ( H). ..

    Injection:

    Article Title: Single-cell transcriptomics of neuroinflammation and cerebrovascular endothelial cells in the aged rat hippocampus
    Article Snippet: .. Based on these results, we conducted single-cell transcriptome analysis (scRNA-seq) on aging rat hippocampus on day 3 after LPS or vehicle injection using the 10X Genomics platform to examine changes in the neuroinflammatory microenvironment ( H). ..



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    xenium-based spatial transcriptomics analysis  (Spatial Transcriptomics Inc)
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    Spatial Transcriptomics Inc xenium-based spatial transcriptomics analysis
    Xenium-Based Spatial <t>Transcriptomics</t> Analysis of TLE and Control Mouse Brain Sections. A Whole-brain transcriptomic information obtained through Xenium-based spatial transcriptomics analysis, with reconstructed cell bodies displayed in different colours. The white box highlights the TLE and control hippocampal regions. B Enlarged view of the hippocampal region highlighted in A. C UMAP plot showing the 27 identified cell types. D - I High-resolution expression patterns of marker genes for astrocytes, microglia, oligodendrocytes, CA1 pyramidal neurons, dentate gyrus granule cells, and CA3 pyramidal neurons in Control and TLE sections. The left side represents the brain of a control mouse, while the right side represents the brain of a TLE mouse. Each red dot represents a positive expression point for a gene, with a diameter of 5 μm
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    Image Search Results


    Xenium-Based Spatial Transcriptomics Analysis of TLE and Control Mouse Brain Sections. A Whole-brain transcriptomic information obtained through Xenium-based spatial transcriptomics analysis, with reconstructed cell bodies displayed in different colours. The white box highlights the TLE and control hippocampal regions. B Enlarged view of the hippocampal region highlighted in A. C UMAP plot showing the 27 identified cell types. D - I High-resolution expression patterns of marker genes for astrocytes, microglia, oligodendrocytes, CA1 pyramidal neurons, dentate gyrus granule cells, and CA3 pyramidal neurons in Control and TLE sections. The left side represents the brain of a control mouse, while the right side represents the brain of a TLE mouse. Each red dot represents a positive expression point for a gene, with a diameter of 5 μm

    Journal: Biomarker Research

    Article Title: Single-cell, single-nucleus and xenium-based spatial transcriptomics analyses reveal inflammatory activation and altered cell interactions in the hippocampus in mice with temporal lobe epilepsy

    doi: 10.1186/s40364-024-00636-3

    Figure Lengend Snippet: Xenium-Based Spatial Transcriptomics Analysis of TLE and Control Mouse Brain Sections. A Whole-brain transcriptomic information obtained through Xenium-based spatial transcriptomics analysis, with reconstructed cell bodies displayed in different colours. The white box highlights the TLE and control hippocampal regions. B Enlarged view of the hippocampal region highlighted in A. C UMAP plot showing the 27 identified cell types. D - I High-resolution expression patterns of marker genes for astrocytes, microglia, oligodendrocytes, CA1 pyramidal neurons, dentate gyrus granule cells, and CA3 pyramidal neurons in Control and TLE sections. The left side represents the brain of a control mouse, while the right side represents the brain of a TLE mouse. Each red dot represents a positive expression point for a gene, with a diameter of 5 μm

    Article Snippet: Fig. 6 Xenium-Based Spatial Transcriptomics Analysis of TLE and Control Mouse Brain Sections.

    Techniques: Control, Expressing, Marker